species:   Clros
pid:       PID2230
parent:    cro-mir-25
paralog:   
locus:     CADEHS020000006.2:978948-979021
matures:   ['UCAUUGACUUUUGACGCACC', 'GGCCUCACAUUCUGUGAUG']
srr:       ERR5960111
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960111.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960111.cram CADEHS020000006.2:978948-979021

8 out of bounds
4 alignments
4 proper strand
4 stranded perfect matches

*******************                                 **********************
GGCCUCACAUUCUGUGAUGAGUAUAGGCGCAAUGCCUCGCUAGCAGAUCCCCCAUCAUUGACUUUUGACGCACC
.((.(((...((.(((((((((..((((.....)))).)))...........)))))).))....))).))...
------------------------------------------------------UCAUUGACUUUUGACGCACC l=20 a=3 c
GGCCUCACAUUCUGUGAUG------------------------------------------------------- l=19 a=0 c*
------------------------------------------------------UCAUUGACUUUUGACGCACC l=20 a=3 ma
GGCCUCACAUUCUGUGAUG------------------------------------------------------- l=19 a=0 ma*

--------------------------------UGCCUCGCUAGCAGAUCCC----------------------- l=19 a=1 
------------------------------------------------------UCAUUGACUUUUGACGCACC l=20 a=3 (c,ma)

mb-01010
ax-1001111
ku-01
ss-101111101110
fn-111
